@Article{scialdone2015computational,
    Author="Scialdone, A.  and Natarajan, K. N.  and Saraiva, L. R.  and Proserpio, V.  and Teichmann, S. A.  and Stegle, O.  and Marioni, J. C.  and Buettner, F. ",
    Title="{{C}omputational assignment of cell-cycle stage from single-cell transcriptome data}",
    Journal="Methods",
    Year="2015",
    Volume="85",
    Pages="54--61",
    Month="Sep"
}

@Article{lun2016pooling,
    Author="Lun, A. T.  and Bach, K.  and Marioni, J. C. ",
    Title="{{P}ooling across cells to normalize single-cell {R}{N}{A} sequencing data with many zero counts}",
    Journal="Genome Biol.",
    Year="2016",
    Volume="17",
    Pages="75",
    Month="Apr"
}

@Article{lun2017assessing,
    Author="Lun, A. T. L.  and Calero-Nieto, F. J.  and Haim-Vilmovsky, L.  and Gottgens, B.  and Marioni, J. C. ",
    Title="{{A}ssessing the reliability of spike-in normalization for analyses of single-cell {R}{N}{A} sequencing data}",
    Journal="Genome Res.",
    Year="2017",
    Volume="27",
    Number="11",
    Pages="1795--1806",
    Month="Nov"
}

@Article{mccarthy2017scater,
    Author="McCarthy, D. J.  and Campbell, K. R.  and Lun, A. T.  and Wills, Q. F. ",
    Title="{{S}cater: pre-processing, quality control, normalization and visualization of single-cell {R}{N}{A}-seq data in {R}}",
    Journal="Bioinformatics",
    Year="2017",
    Volume="33",
    Number="8",
    Pages="1179--1186",
    Month="Apr"
}

@Article{lun2016step,
   Author="Lun, A. T.  and McCarthy, D. J.  and Marioni, J. C. ",
   Title="{{A} step-by-step workflow for low-level analysis of single-cell {R}{N}{A}-seq data with {B}ioconductor}",
   Journal="F1000Res",
   Year="2016",
   Volume="5",
   Pages="2122"
}

@Article{grun2016denovo,
    Author="Grun, D.  and Muraro, M. J.  and Boisset, J. C.  and Wiebrands, K.  and Lyubimova, A.  and Dharmadhikari, G.  and van den Born, M.  and van Es, J.  and Jansen, E.  and Clevers, H.  and de Koning, E. J. P.  and van Oudenaarden, A. ",
    Title="{{D}e {N}ovo {P}rediction of {S}tem {C}ell {I}dentity using {S}ingle-{C}ell {T}ranscriptome {D}ata}",
    Journal="Cell Stem Cell",
    Year="2016",
    Volume="19",
    Number="2",
    Pages="266--277",
    Month="08"
}

@Article{xu2015identification,
    Author="Xu, C.  and Su, Z. ",
    Title="{{I}dentification of cell types from single-cell transcriptomes using a novel clustering method}",
    Journal="Bioinformatics",
    Year="2015",
    Volume="31",
    Number="12",
    Pages="1974--1980",
    Month="Jun"
}
